SE2620344

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7312
  • Oryza sativa
  • SE2620344
  • Mutator
  • M93
  • Chr02:22963177-22963551
  • GAGTAAATT
  • GAGTAAATTTCATAAAACCT

Secondary structure and sequence

TSD    TIR
5'



3' 
                ----    CACA              C        -C    T               A       C     A    A  ATC                 CA   ---TATT   -  TT    - TTTTGATTTTGATCTACTATACTTTTGAGTTCTACAATCACATCTCAAATTTATA
GAGTAAATTTCATAAA    ACCT    TATTATGGTTCAAG TACACAAA  CACA GGATTTTGATATGTG CATATAA CCCAG TATT TG   CTAAAGTTTTACAAAAC  TAC       GAT CA  GATC A                                                       
||||||||||||||||    ||||    |||||||||||||| ||||||||  |||| ||||||||||||||| ||||||| ||||| |||| ||   |||||||||||||||||  |||       ||| ||  |||| |                                                        
CTCATTTAAAGTATTT    TGGA    ATAATACCAGGTTC ATGTGTTT  GTGT CCTAAAACTGTACAC GTATATT GGGTC ATAA AC   GATTTCGAAGTGTTTTG  ATG       TGA AA  AACT T                                                       
                AAGG    --TA              A        TA    C               C       T     C    A  -AT                 --   TAGCAAT   T  --    A ATAAGGATAAACTTTTAAAGTTTTTTTCATTATAAATATACTACCTATTTTATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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