SE2620345

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7313
  • Oryza sativa
  • SE2620345
  • Mutator
  • M94
  • Chr07:1264008-1264719
  • GAGTAATGC
  • GAGTAATGCTCCGGTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
    AA           AA        C    TTTTACTCCAAGTAGAATTAATCTTGACCGTTTATTTTAAAGGGCAGGTAAGTAATCTCCTAATATCGTTTAGGGGTAATTTTGGCATGGGATGTTTTCTTCTGTTCGCATCGTATCAGGTCCGAACTCCGTTGCACGCAGTCACCTCGCTATTCCTCCCCCGGCCTCGCCGCCTTGTCCGCCCCCTCCGTCGCCATCCGTATTCCCCGCCTTTGCCGCCTTGTCTGCTTCCTCAGTCGCATCGTCCGTCTGGGAGCAGACGAGTGTGGTGGCGTCCGAGCGAGCGACGATCTTGAGCAGGAGTTCTGGCGGTAGTAAAAATTCT
GAGT  TGCTCCGGTGC  TCTACTTG AGTA                                                                                                                                                                                                                                                                                                                                     
||||  |||||||||||  |||||||| ||||                                                                                                                                                                                                                                                                                                                                     G
CTCA  ATGAGGCCACG  AAAGATGA GCCT                                                                                                                                                                                                                                                                                                                                     
    GG           --        -    CATCTTTCATTAGATCCGGGAAATAGTATAAATTAATATCCCAATTCTAGATCAAGATGAGGATGGTCTTAATCACCTTCATCTTTACACCTCCCCACAAAAACAGGTTCTTTTTATTAAGCGCTTCCCCATAATAACAAAAGACTAGGTATCTAGCTAGTGGTACAGTAGGAGCAGCCTCAACCAGCACGTTCTAGAATTAGCTAGGTACATTAGGTACTTTGTTGTGTCACTAGCCTTTACCGTTCTTCTGCTTACTCGGCTCTGCTGCGGCGGTTCGTTTACTGTAACGCACGCACGCACTGTGACGGCGGCTTCGGGTCCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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