Plant MITE

SE2620347

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7315
Oryza sativa
SE2620347
Mutator
M95
Chr04:27715739-27715894
GGGAAAATT
GGAAAATTGTAACTATGCCATTATAATTTTGCAAAATTTGATATATGCCATC

Secondary structure and sequence

TSD TIR

5'

3'

G  A  A   T                    GC   A     T          ---CT    CACATGTCATTGACTCAT
 GG AA TTG AACTATGCCATTATAATTTT  AAA TTTGA ATATGCCATC     GACC                  
 || || ||| ||||||||||||||||||||  ||| ||||| ||||||||||     ||||                   
 CC TT AAC TTGGTACGGTAATATTAAAA  TTT AAACT TATACGGTAG     GTGT                  
   A  A   C                    AA   C     C          CCATA    TACTGTACATCCTGGATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620347

GGGAAAATTGTAACTATGCCATTATAATTTTGCAAAATTTGATATATGCCATCCTGACCCACATGTCATTGACTCATGTAGGTCCTACATGTCATTGTGATACCGATGGCATATCTCAAACTTTAAAAAATTATAATGGCATGGTTCCAAATTACC

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