SE2620348

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7316
  • Oryza sativa
  • SE2620348
  • Mutator
  • M96
  • Chr03:9983729-9984222
  • GAGTAAATT
  • GAGTAAATTGCATTAGCGGTACATAAACTTGTCAGGTGCGTGCAATTTAGTGTATGAACTTATAAAATGCTTGTTTTGGTGCATGAACTTAACTTGGTACGTGCAAACTAAGACTAAAATGGCGC

Secondary structure and sequence

TSD    TIR
5'



3' 
              A C                     C                      A                            AAC     A     A   T   AC      G    GACAAGACC     TTCTATGTTGAACATTATAAATTACAAATTAGTAGATGACTTGCATGTACATAAAGGTTATATTTGTAAACTTAGATTCCACTTTATCTTTCTTTGTTTCTGTCCCTTGCATC
GAGTAAATTGCATT G GGTACATAAACTTGTCAGGTG GTGCAATTTAGTGTATGAACTT TAAAATGCTTGTTTTGGTGCATGAACTT   TTGGT CGTGC AAC AAG  TAAAAT GCGC         GATTT                                                                                                                 
|||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||   ||||| ||||| ||| |||  |||||| ||||         |||||                                                                                                                  
CTCATTTAACGTAG C CCATGTGTTTGAACAGTCCAT CACGTTAGATCATGTACTTGAA ATTTTGCGAGCAAAACCACGTGCTTGAA   AACCA GTACG TTG TTC  GTTTTA CGTG         CGTTC                                                                                                                 
              C A                     C                      C                            -CA     C     C   -   CA      G    --------A     CAATTAGAACGACTAAAACAACAACTAAATTTGAAATACATTTGTAATCAGATTCTTCCTATTTGTATATTATTCCGTATTACTAACGTATTTTTTTATTTTTAGACTCATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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