SE2620349

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7317
  • Oryza sativa
  • SE2620349
  • Mutator
  • M96
  • Chr12:27120012-27120554
  • GAGTAAATT
  • GAGTAAATTGCATTGGTGGTACACAAACTTGTTAGGTGGGTGCAATTTAGTATATAAACTTATAAAATGCTCGTTTCAGTATATGAACTTG

Secondary structure and sequence

TSD    TIR
5'



3'
               GT       A                          A         A       C      CA  A      C   CCTA  T      AAC     -C     -TAATT    -      AATTTTATAAA      ------             T    TGCATACGTGCAGTGATTATTATAAAACATGCAATATTTATAAATTTAGTCTCTACTTTATCCTTCATCATTGAAATGATGAATTTCATATGTTTCTAACCCTTA
GAGTAAATTGCATTG  GGTACAC AACTTGTTAGGTGGGTGCAATTTAGT TATAAACTT TAAAATG TCGTTT  GT TATGAA TTG    GT CGTGCG   GAGAA  CAAAA      TGGC AATGTT           GTTGAT      GTTGATTAGGATG GACG                                                                                                         
|||||||||||||||  ||||||| |||||||||||||||||||||||||| ||||||||| ||||||| ||||||  || |||||| |||    || ||||||   |||||  |||||      |||| ||||||           ||||||      ||||||||||||| ||||                                                                                                         T
CTCATTTAACGTAGC  CCATGTG TTGAATAGTCCACCCACGTTAGATCA GTGTTTGAA ATTTTAT AGTAAA  TA GTGCTT AAC    CA GCACGC   CTCTT  GTTTT      ACTG TTACAA           TAACTG      CGACTAATCCTAT ATAC                                                                                                         
               AG       C                          C         C       A      AC  C      A   ACAC  C      --C     CA     TCCTGT    A      -----------      AATCTC             G    AATTGTATATATACTCCTCCTACGGTAATCTGTATGTGGATAAGTTATTTTATATCTTATCCTAAATCACTTACATCTTTTTCTAATTTTTTTAGCTCGTGACTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End