Plant MITE

SE2620350

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7318
Oryza sativa
SE2620350
Mutator
M96
Chr04:13452066-13452622
AGTAAATTG
AGTAAATTGCATC

Secondary structure and sequence

TSD TIR

5'

3'

          A  AGTA   G A      T                    AC     C        ATA     ACC  ------ ACATAAACTTGGCAATCAAGTGTATTTTCGTCAAAACACTATTACATACATATGATTCAACCTATTTTGTTTGTTCTATTATAAGCATAACTATTAGATTATTGGTCATGAGTACAATTGAATATGTTTGACCAGTAGAATCGCTCGGAAATTATGTTATAACAATTTTTATGCACTTAATTTTAACGATCATTATAT
AGTAAATTGC TC    GTA A GAACTT GTAGGTGGGTGCGATTTAGT  AACAA TTGAAAAA   TGCCG   GG      T                                                                                                                                                                                                      
|||||||||| ||    ||| | |||||| ||||||||||||||||||||  ||||| ||||||||   |||||   ||      |                                                                                                                                                                                                       
TCATTTAACG AG    CAT T TTTGAA CATCCACCCACGCTAGATCG  TTGTT AATTTTTT   CTAGT   AA      G                                                                                                                                                                                                      
          C  ATGC   G G      C                    CA     A        --A     ---  ATCCAC TTGTTGAACCGATTATGCACGTAAGACCAATTTTTTAGTTATAATCTGTGGTTTGGAAAATTCGGTGCGTCATTTTTTTTCATCAGCAGCAAACAGTTATTAGATTATTCACATTACTAACAGTTTATTATAACCAGATCTGCATAACATAAACGAACGAATATTATTATTTTATTTCACAGCTAAACTTTGGCTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620350

AGTAAATTGCATCAGTAGTAGAAGAACTTTGTAGGTGGGTGCGATTTAGTACAACAACTTGAAAAAATATGCCGACCGGTACATAAACTTGGCAATCAAGTGTATTTTCGTCAAAACACTATTACATACATATGATTCAACCTATTTTGTTTGTTCTATTATAAGCATAACTATTAGATTATTGGTCATGAGTACAATTGAATATGTTTGACCAGTAGAATCGCTCGGAAATTATGTTATAACAATTTTTATGCACTTAATTTTAACGATCATTATATTTTTCGGTTTCAAATCGACACTTTATTTTATTATTATAAGCAAGCAAATACAATACGTCTAGACCAATATTATTTGACAATCATTACACTTATTAGATTATTGACAAACGACGACTACTTTTTTTTACTGCGTGGCTTAAAAGGTTTGGTGTCTAATATTGATTTTTTAACCAGAATGCACGTATTAGCCAAGTTGTTGCACCTAAATGATCATTTTTTAAATTGTTACGCTAGATCGCACCCACCTACCAAGTTTGTGTACCGTAGACGCAATTTACT

Copy Cancel