SE2620351

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7319
  • Oryza sativa
  • SE2620351
  • Mutator
  • M96
  • Chr09:847528-848203
  • GAGTAAATT
  • GAGTAAATTGCACCCACGGTGCAACAACTTGGCAGGTGGGTGTAATTTGATGTAATAACTTGAAAAATGAGCATTCTAGTACAACAACTTGGCAAGAAGGTGCAATTTAGTATAAGAATTTTATAA

Secondary structure and sequence

TSD    TIR
5'



3'
                                           A  T  A     T       A  A     A   T   A   C           AA     AA                T    GTGATC    AAATACAACA      AAGGTAGGTACAATACAATAAATTAAGAAGTTGTGTGACAACTTAATTATTTGAAGCATTTTTTATATAAATTCAAATTTTTAAGTACTTATTTTTACAATATACTAGTGTGGATTTGTATAAACATATTTATATTTTTATCCTAATAACTAATAACTGAAAGTCAATTAAACTGGATGCAGAAATTATT
GAGTAAATTGCACCCACGGTGCAACAACTTGGCAGGTGGGTGT AT TG TGTAA AACTTGA AA TGAGC TTC AGT CAA AACTTGGCAAG  GGTGC  TTTAGTATAAGAATTT ATAA      GTAT          ACTTGC                                                                                                                                                                                              
||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||| || ||||| ||| ||| ||| |||||||||||  |||||  |||||||||||||||| ||||      ||||          ||||||                                                                                                                                                                                              A
CTCATTTAACGTGGGTGCCATGTTGTTGAACTGTCCACCCACG TA AT ACGTT TTGAACT TT ACTTG AGG TCA GTT TTGAACTGTTC  CCACG  AGATCATGTTTTTGAA TGTT      CATA          CCACTT                                                                                                                                                                                              
                                           C  T  C     C       C  A     C   C   C   A           AC     CA                T    --AAAT    -------AAA      AGTTAAACCGATTCGTATACGATCCACTCAAAAAAGTGCTACAGTTATACGGTTATGTGTCATTATGATACTATAATGGAATATTATAATTTAAATTAGAAATTCTTAATATAACGTGTATGTTAAATGTAAGTCAATGGAATTTCTTAAAAAAAAACAAAAGAAGTGGAAGAGTTTATAGTTGGTTTAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End