Plant MITE

SE2620352

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7320
Oryza sativa
SE2620352
Mutator
M97
Chr05:17141362-17141724
GAGTTAATT
GAGTTAATTTCACTTTGGGCCATGTTTTATTGTCAAAGTTTCACTTTGGACCACCCTTTATCTAATTTTTTTACTTTGGACTAGGTAACTTTACCTTTGTTGCACAATGGACCATCCCAAAACATATTTTC

Secondary structure and sequence

TSD TIR

5'

3'

    T    T                                             CTT   C          A                                       C    CAA   ATA        TCTTCGATGACTTCGAGCAAATTGTTAACGGCATGCCAGCAAACTTTCA
GAGT AATT CACTTTGGGCCATGTTTTATTGTCAAAGTTTCACTTTGGACCACC   TAT TAATTTTTTT CTTTGGACTAGGTAACTTTACCTTTGTTGCACAATGGAC ATCC   AAC   TTTTCATT                                                 
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||   |||   ||||||||                                                  
CTCA TTAA GTGAAACCCGGTACAAAATAATGGTTTCAAAGTGAAACCTGGTGG   ATG ATTAGAAAAG GAAACCTGATCCATTGAAATGGAAACAACGTGTTACCTG TGGG   TTG   AAAAGCGA                                                 
    C    T                                             AAC   T          C                                       A    --A   -AG        ACACTACAAATCGCAGAGAAAGCTGTTTTTATACAGTACGTATATCCAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620352

GAGTTAATTTCACTTTGGGCCATGTTTTATTGTCAAAGTTTCACTTTGGACCACCCTTTATCTAATTTTTTTACTTTGGACTAGGTAACTTTACCTTTGTTGCACAATGGACCATCCCAAAACATATTTTCATTTCTTCGATGACTTCGAGCAAATTGTTAACGGCATGCCAGCAAACTTTCATACCTATATGCATGACATATTTTTGTCGAAAGAGACGCTAAACATCACAAGCGAAAAGAGTTAGGGTAGTCCATTGTGCAACAAAGGTAAAGTTACCTAGTCCAAAGCGAAAAGATTATGTACAAGGTGGTCCAAAGTGAAACTTTGGTAATAAAACATGGCCCAAAGTGTAATTCACTC

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