SE2620353

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7321
  • Oryza sativa
  • SE2620353
  • Mutator
  • M97
  • Chr03:32359890-32360267
  • GAGTAAATT
  • GAGTAAATTGCGTTTAGGGCCACCTTTTATTACCAAAGTTTCACTTTGGAC

Secondary structure and sequence

TSD    TIR
5'



3'
      A          A  G                                CACC     A A   T                   TACT        CTTT                CATAAACTTTTTTA      CATAAAAGACTGTTCCAACTTTAAACACATCAGCAACCCGTAACCCAGTAATC
  GAGT AATTGCGTTT GG CCACCTTTTATTACCAAAGTTTCACTTTGGAC    CTTTA C CAT TTTTCATTTTGGGCTAGGT    TTACCTTT    CACTTTGGACCACCCC              GGAATA                                                     
  |||| |||||||||| || ||||||||||||||||||||||||||||||||    ||||| | ||| |||||||||||||||||||    ||||||||    ||||||||||||||||              ||||||                                                      
  CTCA TTAACGTGAA CC GGTGGAAAATAATGGTTTCAAAGTGAAACCTG    GAGAT G GTA AAAAGTGAAACCTGGTCCA    AATGGAAA    GTGAAACCTGGTGGGG              AAGAAA                                                     
AT    A          A  A                                ATAA     C A   T                   TTCT        CCAC                ------TTCAGTAA      TCGACATAAATGAGATATTTACAACATTTCTTAATGGACGCATTCAACCTTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End