Plant MITE

SE2620354

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7322
Oryza sativa
SE2620354
Mutator
M99
Chr04:21698701-21698856
GAGCGATTT
GAGCGATTTGATAATTTACCACT

Secondary structure and sequence

TSD TIR

5'

3'

   C             AC    --CCTTTAA    -  TTT  TTATTTGACATCATGATCCACTTTCATTCACTCAGAT
GAG GATTTGATAATTT  CACT         ATGA GT   GA                                     
||| |||||||||||||  ||||         |||| ||   ||                                      
CTT TTAAACTATTAAA  GTGA         ACGG TT   AA                                     
   T             CT    AAAAAAGCA    G  ---  TAAATTTAACCGTGAACACTCCTACTATTCACCCTGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620354

GAGCGATTTGATAATTTACCACTCCTTTAAATGAGTTTTGATTATTTGACATCATGATCCACTTTCATTCACTCAGATGGTCCCACTTATCATCCTCACAAGTGCCAATTTAAATAATTGGGCAACGAAAAAAAGTGTCAAATTATCAAATTTTTC

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