SE2620355

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7323
  • Oryza sativa
  • SE2620355
  • Mutator
  • M100
  • Chr08:5850031-5850702
  • GAGAGAATC
  • GAGAGAATCCACTCAGTGCCACTGAGTTTCTACCACTTCTACAATATACCACTGACTTTGTCAAATTGAATAATATGCCATCGAGTTTTCCCAAACGTCTACTGCGTGCCATCGCCGTCCACAAGCCGTTAGGGTGCATCCGTTTGGTGTA

Secondary structure and sequence

TSD    TIR
5'



3'
                     C       C   C                              A                  A        A                      C     C    C     --  T     C   --T G    --TT   TTTTTTCTTAATGACTAAAATGCCCATGACTAATAAACCCTAGCACCTGTTTTAGTAAAATATTTTGGTATTCATTTCTATATCTATATGAGCTCAGTGCCATGCACCATGTTCAAACTTGTTTTATATCTAACTGTATGGGGTTGATTTTTTTTTTCATTATGTACATTTATTTTT
GAGAGAATCCACTCAGTGCCA TGAGTTT TAC ACTTCTACAATATACCACTGACTTTGTCAA TTGAATAATATGCCATCG GTTTTCCC AACGTCTACTGCGTGCCATCGC GTCCA AAGC GTTAG  GG GCATC GTT   G TGTA    GAA                                                                                                                                                                                 
||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| |||| |||||  || ||||| |||   | ||||    |||                                                                                                                                                                                 T
CTCTCTTAGGTGAGTCACGGT ACTCAAA GTG TGAAGATGTTATATGGTGACTGAAACAGTT AACTTATTATACGGTAGC CAAAAGGG TTGCAGATGACGCACGGTAGTG CAGGT TTCG CAATC  CC CGTAG CAA   C ACAT    CTG                                                                                                                                                                                 
                     A       A   A                              C                  A        C                      T     C    A     AA  -     A   TCT G    TTTT   GATAAACGGGGATTGAGTAACATGTACAAAAAAAAAAACGGCTCCCTGTATACATAATATACTTATGTATATCTCTTTGACTAACTTAGTATATTGTCGGATACTAACGATCGAAGTGCGCAACCATCTCTGCATCACTTGATCACTAGACAACTGAAACTTTACCCTGTATAGCCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End