Plant MITE

SE2620356

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7324
Oryza sativa
SE2620356
Mutator
M101
Chr02:26967884-26968200
AGAGATAAT
AGAGATAATCCATAAAATGCCATTGACAAGCGTCCAAGTCCCAGAAATGCCATCGACAAGTGTAAGTTCCAAGAAATGCCATCGTACAAACGATTTTGTCCCAAAAATGCCATCGCCGTTAGGGTTCCTTCCATTCCACGCCGTTAAGTTCTATAG

Secondary structure and sequence

TSD TIR

5'

3'

                                  C     C                      A                         A                                      T        A           TC   A GAT
AGAGATAATCCATAAAATGCCATTGACAAGCGTC AAGTC CAGAAATGCCATCGACAAGTGT AGTTCCAAGAAATGCCATCGTACAA CGATTTTGTCCCAAAAATGCCATCGCCGTTAGGGTTCC TCCATTCC CGCCGTTAAGT  TAT G   
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||  ||| |    
TCTCTATTAGGTATTTTACGGTAACTGTTCGTAG TTCAG GTCTTTACGGTAGCTGTTCACA TCAAGGTTCTTTACGGTAGTATGTT GCTAAAACAGGGTTTTTACGGTAGCGGCAATCCCAAGG AGGTAAGG GCGGCAATTTA  GTA C   
                                  A     A                      C                         C                                      C        C           -T   A AAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620356

AGAGATAATCCATAAAATGCCATTGACAAGCGTCCAAGTCCCAGAAATGCCATCGACAAGTGTAAGTTCCAAGAAATGCCATCGTACAAACGATTTTGTCCCAAAAATGCCATCGCCGTTAGGGTTCCTTCCATTCCACGCCGTTAAGTTCTATAGGATGAACAATGTATTTAACGGCGCGGAATGGACGGAACCCTAACGGCGATGGCATTTTTGGGACAAAATCGCTTGTATGATGGCATTTCTTGGAACTCACACTTGTCGATGGCATTTCTGAGACTTAGATGCTTGTCAATGGCATTTTATGGATTATCTCT

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