SE2660357

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7325
  • Oryza sativa
  • SE2660357
  • Micron
  • Mim1
  • Chr04:29058407-29058799
  • GTAAATT
  • ATTTGTTTGGTGCTCCATGGTGCCCGGGCACCATTGTTGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTAA      T   T  T                    --       ---AT      TATACCTAATTCAAATGAGTATGAAACTTTTTCAATTACTTAGATATTAACATTAGCTACTTTACTAACTAGTTCAAAGCAAGTTTGAACTGAATTTGAACTTGTTTTTGTTAGATTTTGATTCTAGGTATATAGCATCCA
    ATTTGT TGG GC CCATGGTGCCCGGGCACCAT  TGTTGAA     TGAGTA                                                                                                                                             
    |||||| ||| || ||||||||||||||||||||  |||||||     ||||||                                                                                                                                              
    TGAGTA ACC CG GGTACCACGGGCCCGTGGTA  ATAGTTT     TTTTAG                                                                                                                                             
CCTG      T   C  T                    CC       ATGTG      TGAGTTTAAAAAGTTTTAAAAGTTTAACACTCATATATGGATCAATATTATTGAGCTAAGTATGGATATGGATAGTTGTTTTATTGAGTTTAAATTGAAATAAAGTGTTAGGTACTAATGTATGGATTGATTAATATACAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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