Plant MITE

SE2610358

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7326
Oryza sativa
SE2610358
Tc1/Mariner
St1
Chr10:14444775-14445019
TA
TACTCCCTCCGTTCCAAAATATAAGGATTTCT

Secondary structure and sequence

TSD TIR

5'

3'

                    A     A     -------A     CAAAT    ----  CCACAATACAAGGATCCCTGCACTAATTCCCATCATTTCAATGATTCCAAAGCATTGCCAATCACATGCT
TACTCCCTCCGTTCCAAAAT TAAGG TTTCT        GGATT     CTTG    TA                                                                      
|||||||||||||||||||| ||||| |||||        |||||     ||||    ||                                                                      T
ATGAGGGAGGCAAGGTTTTA ATTCC AAAGA        TTTAC     GATT    TC                                                                      
                    C     C     CCCAACCG     -----    CTAA  CAGTTTTCTTTGGAAAAATCAGTAAAGTCAACAGTTAAAAACTTAAAACTTAACGAATCTAAGGGAAAGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610358

TACTCCCTCCGTTCCAAAATATAAGGATTTCTAGGATTCAAATCTTGTACCACAATACAAGGATCCCTGCACTAATTCCCATCATTTCAATGATTCCAAAGCATTGCCAATCACATGCTTGGAAAGGGAATCTAAGCAATTCAAAATTCAAAAATTGACAACTGAAATGACTAAAAAGGTTTCTTTTGACCTAATCTTAGCATTTGCCAACCCAGAAACCCTTACATTTTGGAACGGAGGGAGTA

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