SE2610359

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7327
  • Oryza sativa
  • SE2610359
  • Tc1/Mariner
  • St10
  • Chr02:18510553-18510815
  • TA
  • TACTCCCTCCATTCCATAATATAAGGCACAACCACTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
              CAT                     CCTT      TC --   ATATAAG      ATGCAAGCATGCAATTAACTATGACATCTTCTCCATTAAATTATTATTTTTTAAATCCTCCACTCTCAT
TACTCCCTCCATTC   AATATAAGGCACAACCACTTT    AGATGT  C  ATA       GCATGC                                                                     
||||||||||||||   |||||||||||||||||||||    ||||||  |  |||       ||||||                                                                     G
ATGAGGGAGGTAAG   TTATATTCCGTGTTGGTGGGA    TTGGGT  T  TGG       TTTTTA                                                                     
              ATT                     ---A      -- TC   -------      TTAATAATAGTAGAACATCAAACTTAGTAGGATTATTTATATTACGTACGTAGGTTATCCTAATCTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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