SE2610360

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7328
  • Oryza sativa
  • SE2610360
  • Tc1/Mariner
  • St11
  • Chr12:22409743-22409962
  • TA
  • TACTACCTCCGTCCCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
    A               ATA    TTTCTAGCACAGTACTTTGTCCCAAAATGAAGCTATTTTTCTACCTACCTTCTCCTCTCAACCAATCACAACCATTCTTTTTC
TACT CCTCCGTCCCAAAAT   GCTA                                                                                   
|||| |||||||||||||||   ||||                                                                                   A
ATGA GGAGGCAGGGTTTTA   TTAG                                                                                   
    A               -CA    TAAAAACTCCAACCGTGCCCATAATTCTTTCATACACTCTTACTAACTTCTTACACACACTAACCAACTTTTCTCTTTCATCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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