SE2610361

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7329
  • Oryza sativa
  • SE2610361
  • Tc1/Mariner
  • St12
  • Chr02:19987092-19987351
  • TA
  • TACTCCCTCCATCCCATAATATAAGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
         C                 ATG    AACTTGACACAGTCTTCAAAACTAATCTTTGACTTATAATTTCTCATATATTATAAGGTTTATTGCAACAAAATTATAACATGATAAAGTAAATTT
TACTCCCTC ATCCCATAATATAAGGC   GTCA                                                                                                
||||||||| |||||||||||||||||   ||||                                                                                                 
ATGAGGGAG TAGGGTATTATATTCCG   GTGT                                                                                                
         A                 CAT    ATAAAGTTCTAAGTCGAAATTTTTATAAACTGGTTATTAATAATATTATATTTAATTTAAAATAAACGATTTTAATTATAGTAATCTAACTGTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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