Plant MITE

SE2610362

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7330
Oryza sativa
SE2610362
Tc1/Mariner
St13
Chr07:8802936-8803189
TA
TACTCCCTCCATCCCAAAATATAAGGCTCAACCACT

Secondary structure and sequence

TSD TIR

5'

3'

                           T  AC    CATAATACAAA         AACATTTAATCACCTTCTTGGTTGGATCACCTTGATGCATGCAAGCAATGTGATAGGGGGTTTGATGGTATAGG
TACTCCCTCCATCCCAAAATATAAGGC CA  CACT           GACCAAGAA                                                                          
||||||||||||||||||||||||||| ||  ||||           |||||||||                                                                          A
ATGAGGGAGGTAGGGTTTTATATTCCG GT  GTGA           AGAGTATAG                                                                          
                           T  CA    -------AAAG         AGTATTATATTCTGCACGTACGTACGTATGTAATTGATCGTGTAGAACTAGGTTATCTTAACTAAACAAAATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610362

TACTCCCTCCATCCCAAAATATAAGGCTCAACCACTCATAATACAAAGACCAAGAAAACATTTAATCACCTTCTTGGTTGGATCACCTTGATGCATGCAAGCAATGTGATAGGGGGTTTGATGGTATAGGATTTAAAACAAATCAATTCTATTGGATCAAGATGTGCTAGTTAATGTATGCATGCATGCACGTCTTATATTATGAGATATGAGAGAAAAGTGACTGTGCCTTATATTTTGGGATGGAGGGAGTA

Copy Cancel