Plant MITE

SE2610364

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7332
Oryza sativa
SE2610364
Tc1/Mariner
St15
Chr05:2125212-2125507
TA
TACTCCCTCCATCTACTTTTGATAGTCATATTTC

Secondary structure and sequence

TSD TIR

5'

3'

                                  AT     CACACAGACCAAGGATAAGTAATTGTACTTATCATCCATTTAAACATGCTACTAGTCATTCCTCGTAAACAAGCGATTCATTAATATTTACATTTCTCAATGCCCATG
TACTCCCTCCATCTACTTTTGATAGTCATATTTC  CTTGG                                                                                                            
||||||||||||||||||||||||||||||||||  |||||                                                                                                             
ATGAGGGAGGTAGATGAAAACTATCAGTATAAAG  GTTTA                                                                                                            
                                  --     GACTTTTAAAATAAAAACTATCCGTATAAAGTTAGATTGTTGGATAGTAGAATTACTGAAAGAGCCTAAATTACGTATTGAGAAGTAAGAAGGTGTGTATTAACCGAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610364

TACTCCCTCCATCTACTTTTGATAGTCATATTTCATCTTGGCACACAGACCAAGGATAAGTAATTGTACTTATCATCCATTTAAACATGCTACTAGTCATTCCTCGTAAACAAGCGATTCATTAATATTTACATTTCTCAATGCCCATGTAGCCAATTATGTGTGGAAGAATGAAGAGTTATGCATTAAATCCGAGAAAGTCATTAAGATGATAGGTTGTTAGATTGAAATATGCCTATCAAAAATAAAATTTTCAGATTTGGAAATATGACTATCAAAAGTAGATGGAGGGAGTA

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