SE2610365

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7333
  • Oryza sativa
  • SE2610365
  • Tc1/Mariner
  • St15
  • Chr05:7459330-7459694
  • N.A.
  • CTCCCTCCGTTCAAGTTTGATCGTCATATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                                --      ACACACAGACCAA GACAGGAAACGCACTTATCATCTTTCTAATCTACTCATTATTGCACTTACATCTTTCTAATCATAATGGCCCATGCATGCACGACGGAACCAATGATCTGTAGCCAACTGTGATTGCCATTAATTTTGCATGCATG
CTCCCTCCGTTCAAGTTTGATCGTCATATTTT  GGCTTG             G                                                                                                                                        
||||||||||||||||||||||||||||||||  ||||||             |                                                                                                                                         
GAGGGAGGCAGGTTCAAACTAGCAGTATAAAG  TTTTAA             C                                                                                                                                        
                                TT      ------------- ATAAAAGTTAAAACTAGCACTGTAAACGTCAGCCGTCGGCAAGGTAGAGCAGGCTACGCGACCGGCAAAGATAAGCGCACGCTTTAATTAGTCCAACGCGCGCCTGCGGAGCCCTCGTCAGATTTTTTCGAACAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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