SE2610366

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7334
  • Oryza sativa
  • SE2610366
  • Tc1/Mariner
  • St16
  • Chr01:31494803-31495047
  • TA
  • TACTACCTCCGTCCCAAAATAATTGTAATTCTATG

Secondary structure and sequence

TSD    TIR
5'



3' 
                           A       -----------TT        TATATTAAGGTTTGAGAAGAAAGACTATGGTGCCCCTCATTAAATGGTGTTTATGTGAGAGTGGGAAGATGG
TACTACCTCCGTCCCAAAATAATTGTA TTCTATG             GTTTATCA                                                                        
||||||||||||||||||||||||||| |||||||             ||||||||                                                                         
ATGATGGAGGCAGGGTTTTATTAACAT AAGATAC             GGGTTTTA                                                                        
                           A       TAAGTTTGAAACA        TTAACATTAAAATCTCATGATTAACGGGGTAGTTAGTAGATAGTAAGTTTAAAGAGGGATAATATGGGAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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