SE2610367

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7335
  • Oryza sativa
  • SE2610367
  • Tc1/Mariner
  • St17
  • Chr03:26478636-26478866
  • TA
  • TACTCCCTCCTTCCAAAAATCTGAGACCTATTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
                                  TTTTTCATTAAAACTAAG    AATTAACTCAC   CCATGTGGCAAAACCAATAAACATACAACCAATAAGTACTAGAATACTTTTTGGTTTCT
TACTCCCTCCTTCCAAAAATCTGAGACCTATTTC                  AAGT           TCA                                                           
||||||||||||||||||||||||||||||||||                  ||||           |||                                                            
ATGAGGGAGGAAGGTTTTTAGACTCTGGATAAAG                  AGAA           ACC                                                           
                                  ----------------TA    -----------   AAAAAGGTTTTTAGATTCAGGATAAACATTAGTGATACACGATTTAATTTACCAACTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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