SE2610368

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7336
  • Oryza sativa
  • SE2610368
  • Tc1/Mariner
  • St18
  • Chr08:26552280-26552542
  • TA
  • TTCCTCCATTTCAAATTACTTATCATTTTAATTTTGTCTTAAGTTAAACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAC       A         A   A  A     A     T T       AA  CATA   C   G     CAT     AAAAAAATCC    A  --    ---CGT     TATTTATGTTTTTAGATCCACAGTAAG
   TTCCTCC TTTCAAATT CTT TC TTTTA TTTTG C TAAGTTA  CA    TAT TTT ACCAT   TTTTT          CTGT AT  TTAA      CATAA                           
   ||||||| ||||||||| ||| || ||||| ||||| | |||||||  ||    ||| ||| |||||   |||||          |||| ||  ||||      |||||                           A
   AGGGAGG AAAGTTTAA GAA AG AAAAT GAGAC G ATTCAGT  GT    ATA AAA TGGTA   AAAAA          TCTT TA  TAAA      TATTG                           
ATA       C         A   G  C     C     C T       TG  ACAA   A   A     AAT     ----------    -  AG    TCATAT     TACACTTATTGTATAATATTTTTATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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