SE2610370

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7338
  • Oryza sativa
  • SE2610370
  • Tc1/Mariner
  • St2
  • Chr02:6111399-6111670
  • TA
  • TACTCCCTCCTTCCCAAATTGATCATCATGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
                  T             ------AT    TTCAAAATTTCTCAAATTGATCATCATATAACCGCATGGACACGGATTTCATCATAATACAATTAATGCAGCATGGGAGAATGTGTGCATGCTAA
TACTCCCTCCTTCCCAAA TGATCATCATGTA        GGAA                                                                                               
|||||||||||||||||| |||||||||||||        ||||                                                                                                
ATGAGGGAGGAAGGGTTT ACTAGTAGTATAT        GTGG                                                                                               
                  T             ACAAATAC    TTCTGGTTCCTATTAAATTTAGTGTAGTTAGTTCTGTGGTACGTGCGTAAGAGGGTGTTACGTACGTAGCTAGTTTTGTGGTACGGTTAATGTGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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