Plant MITE

SE2610371

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7339
Oryza sativa
SE2610371
Tc1/Mariner
St2
Chr06:23411798-23412120
N.A.
CTCCCTCCATTCCATAATGATCAGCGCATAACGAAAGTAGAGATATTCCGATTT

Secondary structure and sequence

TSD TIR

5'

3'

                         -------------    AAC  --   T      --   -  G    ----G     C TATTAACACTGGTAGCATGTGCATGTCGGATGGATTAACTAGTTATCACAGAGATCGAGTTGGCCATGCGATTTTTGAGCTGCATGCAG
CTCCCTCCATTCCATAATGATCAGC             GCAT   GA  AAG AGAGAT  ATT CC ATTT     ATCAG G                                                                                         
|||||||||||||||||||||||||             ||||   ||  ||| ||||||  ||| || ||||     ||||| |                                                                                          
GAGGGAGGTAAGGTATTACTAGTCG             CGTA   CT  TTC TCTCTG  TGA GG TAAA     AATTA G                                                                                         
                         TATAAAACAACAC    GTT  GG   C      GG   T  G    AGATA     - GAACATTAATTAGAGGTATAATTAGCCGAACCTCTTTGCTTTGCTGCAATGACGGCGACGTACTAACGTGTACGTTCCCTACAAGGCAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610371

CTCCCTCCATTCCATAATGATCAGCGCATAACGAAAGTAGAGATATTCCGATTTGATCAGCGTATTAACACTGGTAGCATGTGCATGTCGGATGGATTAACTAGTTATCACAGAGATCGAGTTGGCCATGCGATTTTTGAGCTGCATGCAGCACGGAACATCCCTTGCATGTGCAATCATGCAGCGGCAGTAACGTCGTTTCGTTTCTCCAAGCCGATTAATATGGAGATTAATTACAAGGATTAAATAGAAAATGGGTAGTGGGTCTCTCCTTGGTCTTGATGCCACAACAAAATATGCTGATCATTATGGAATGGAGGGAG

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