SE2610373

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7341
  • Oryza sativa
  • SE2610373
  • Tc1/Mariner
  • St21
  • Chr02:7015390-7015632
  • TA
  • TACTACCTCCGTCCCAGAATACTTGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
    A           G     TT   A      GTTGTTTAGCAAGTGCTAAAGTTAGAAGAAAAAGACTATAATACCCTTAATAAAATATTATATAGTTAGATGTGGAATGGTGGTTTGGT
TACT CCTCCGTCCCA AATAC  GTC TTCTAG                                                                                         
|||| ||||||||||| |||||  ||| ||||||                                                                                          
ATGA GGAGGCAGGGT TTATG  CAG AGAAAT                                                                                         
    A           G     --   -      CGTAAGTTTTTAACAGGGTTTTATTAACAGTGAACCTTCATGATAAACAGTGTAGTTGGTGAAGGTTAAGTTTAAAGAGGGGTAGTATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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