SE2610374

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7342
  • Oryza sativa
  • SE2610374
  • Tc1/Mariner
  • St22
  • Chr01:16370586-16370845
  • TA
  • TACTCCCTCCGTCCCAAAATATAAGCATTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                                AGCATA T   A       CATTTTCAACTTTGACTATTAATAGCAAAAAAATAAAAAATATTAATCATGTAAAATTGATGTTACTAGATTTATCATTAAAC
TACTCCCTCCGTCCCAAAATATAAGCATTTTT      G GAC AGTCAAA                                                                                   
||||||||||||||||||||||||||||||||      | ||| |||||||                                                                                    
ATGAGGGAGGCAGGGTTTTATATTCGTAAAAA      C CTG GGACTGT                                                                                   
                                ------ -   -       GCCATAGTCTCTACGATGAAACTGGTTGTTATAGATATTTTCATTCTACAAAATTTATTTTTCTCAACGTATAATACTATCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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