Plant MITE

SE2610376

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7344
Oryza sativa
SE2610376
Tc1/Mariner
St24
Chr02:10208602-10208861
TA
TACTCCCTCCGTCCCAAATTATAAGGCCTATATTTTTTTACATGATCTTCAATG

Secondary structure and sequence

TSD TIR

5'

3'

                       A   -  ATA        CAT    ---       ATATAC      C       -    --       -    TCCCAATGAATATGAAATTAGCATCACATGAAAATAATA
TACTCCCTCCGTCCCAAATTATA GGC CT   TTTTTTTA   GATC   TTCAATG      TTTGAC AATAATT TATT  CCATGTT ATGT                                       
||||||||||||||||||||||| ||| ||   ||||||||   ||||   |||||||      |||||| ||||||| ||||  ||||||| ||||                                        
ATGAGGGAGGCAGGGTTTAATAT CTG GA   GAAAAAAT   TTAG   GAGTTAT      AAACTG TTATTAG ATAA  GGTATAG TACG                                       
                       C   C  -GA        CCT    TTT       ---CGA      A       T    TT       A    ATTCATAATACGTACAATATAGTGATCTAAGTATAAAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610376

TACTCCCTCCGTCCCAAATTATAAGGCCTATATTTTTTTACATGATCTTCAATGATATACTTTGACCAATAATTTATTCCATGTTATGTTCCCAATGAATATGAAATTAGCATCACATGAAAATAATACAAAATATGAATCTAGTGATATAACATGCATAATACTTAGCATAGATATGGTTAATATGATTATTAGTCAAAAGCTATTGAGTTTGATTTCCTAAAAAAGAGAGCGTCCTATAATTTGGGACGGAGGGAGTA

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