SE2610377

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7345
  • Oryza sativa
  • SE2610377
  • Tc1/Mariner
  • St25
  • Chr03:35187753-35187995
  • TA
  • TACTCCCTCCATCCTACAATATAAGGGATT

Secondary structure and sequence

TSD    TIR
5'



3' 
                C             --T   CCCTTCTAGTTGTCCCACAATATAAGGGATTTTGATGTACTACTTGTCACATCCATCAACTCCAATTCAAATTTTTACCTATTTTA
TACTCCCTCCATCCTA AATATAAGGGATT   TGC                                                                                      
|||||||||||||||| |||||||||||||   |||                                                                                      A
ATGAGGGAGGTAGGGT TTATATTCCCTAA   GGG                                                                                      
                A             TAA   AAAACCCATTCAAATTCCTATAGTTCTTTTATGATCTTACGGGGATAATTTACTATAAACTAATATCCACTCACCCATCAACTCCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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