Plant MITE

SE2610378

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7346
Oryza sativa
SE2610378
Tc1/Mariner
St26
Chr05:20046520-20046774
TA
TACTCTCCCCTGTCATAAATATTTGACATTTAGAACGAGATTCGGTTAAATTTTTAGAACTCTAACCATCAAT

Secondary structure and sequence

TSD TIR

5'

3'

       C  T              A A     AAC      C            A       A         TTTA     GA  -  GT  ATAAAATCTAATAAGTTTATGATATTATGATAGTACTT
TACTCTC CC GTCATAAATATTTG C TTTAG   GAGATT GGTTAAATTTTT GAACTCT ACCATCAAT    TATTA  AT AA  TT                                      
||||||| || |||||||||||||| | |||||   |||||| |||||||||||| ||||||| |||||||||    |||||  || ||  ||                                       
ATGAGGG GG CAGTGTTTATAGAC G AAATC   TTCTAA CCAGTTTGAAAA TTTGAGG TGGTAGTTA    TAAAG  AG TT  TG                                      
       T  T              C C     CTA      A            C       C         ---T     --  C  -A  AATCAAAAATTCTTTGCTAACGTATATAAACGGGACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610378

TACTCTCCCCTGTCATAAATATTTGACATTTAGAACGAGATTCGGTTAAATTTTTAGAACTCTAACCATCAATTTTATATTAGAATAAGTTTATAAAATCTAATAAGTTTATGATATTATGATAGTACTTTTCAGGGCAAATATATGCAATCGTTTCTTAAAAACTAAGTATTCGAGAAATTATTGATGGTCGGAGTTTCAAAAGTTTGACCAAATCTTATCCTAAACGCCAGATATTTGTGACTGGTGGGAGTA

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