SE2610379

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7347
  • Oryza sativa
  • SE2610379
  • Tc1/Mariner
  • St27
  • Chr06:26402561-26402749
  • TA
  • TACTCCCTCCGTCCCAATATAATTGCAACCTAGTACGGATGTGACATACCCTATGACTAGGAATCTGGATAGGCAACTGTCCAGATTCGTAATCCTAGGATATGT

Secondary structure and sequence

TSD    TIR
5'



3' 
                      T     -        G           C    T A                   --------  -     --A    C
TACTCCCTCCGTCCCAATATAA TGCAA CCTAGTAC GATGTGACATA CCTA G CTAGGAATCTGGATAGGCA        AC TGTCC   GATT 
|||||||||||||||||||||| ||||| |||||||| ||||||||||| |||| | |||||||||||||||||||        || |||||   |||| G
ATGAGGGAGGCAGGGTTATATT ACGTT GGATCATG CTACACTGTAT GGAT C GATCCTTAGACCTATCTGT        TG ATAGG   CTAA 
                      C     T        A           A    C C                   TACTACAC  T     ATC    T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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