Plant MITE

SE2610380

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7348
Oryza sativa
SE2610380
Tc1/Mariner
St28
Chr02:13973135-13973360
TA
TACTCCCTCGGTCAAAAAATATAAGAATTTCTGG

Secondary structure and sequence

TSD TIR

5'

3'

        CG   AA        AG         ---AG     --  CAGG    AAGGAAGTA   AGAATTAAATTGGAAAAGGGTGATTGGTTGAGAAGAAGTGGGTGGAGAAAT
TACTCCCT  GTC  AAAATATA  AATTTCTGG     TTAGC  CA    TATT         GAT                                                   
||||||||  |||  ||||||||  |||||||||     |||||  ||    ||||         |||                                                    
ATGAGGGA  TAG  TTTTATAT  TTGAAGATC     TTTTA  CA    TCTT         TTA                                                   
        AG   GG        CG         GTAAG     AA  -GGG    ------ATA   TTTGAAGAGGTGGATGATCGAGTAGACTTGGTTAGTGTTGGTAGAGTAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610380

TACTCCCTCGGTCAAAAAATATAAGAATTTCTGGAGTTAGCCACAGGTATTAAGGAAGTAGATAGAATTAAATTGGAAAAGGGTGATTGGTTGAGAAGAAGTGGGTGGAGAAATTAAATGAGATGGTTGTGATTGGTTCAGATGAGCTAGTAGGTGGAGAAGTTTATTATATTCTGGGACAAATTTTGAATGCTAGAAGTTGCTATATTTTGGGATGAAGGGAGTA

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