Plant MITE

SE2610381

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7349
Oryza sativa
SE2610381
Tc1/Mariner
St29
Chr02:24049721-24049952
TA
TACTCCTTCCGTCCCAAAATATA

Secondary structure and sequence

TSD TIR

5'

3'

       T      C        ATGA    TAGAGTTGGGCATGGGTATCAAGCAGAAAAGTAAAATAAACTGAGGGATGGTTGTGATTGGTTGAGATGAGGAAGTAGGTGAAGACA
TACTCCT CCGTCC AAAATATA    CATC                                                                                       
||||||| |||||| ||||||||    ||||                                                                                        
ATGAGGG GGTAGG TTTTATAT    CGAT                                                                                       
       T      A        ----    GAAAATCGTAAGTTATTAACAGGGTTTTATATCGATGGAAACATGGATGAGAGAGTAGAGTTGGTTAGTGTTGGTAGAGAGTAAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610381

TACTCCTTCCGTCCCAAAATATAATGACATCTAGAGTTGGGCATGGGTATCAAGCAGAAAAGTAAAATAAACTGAGGGATGGTTGTGATTGGTTGAGATGAGGAAGTAGGTGAAGACATTAAATGAGAGATGGTTGTGATTGGTTGAGATGAGAGAGTAGGTACAAAGGTAGCTATATTTTGGGACAATTATTGAATGCTAAAAGTAGCTATATTTTAGGATGGTGGGAGTA

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