SE2610382

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7350
  • Oryza sativa
  • SE2610382
  • Tc1/Mariner
  • St3
  • Chr05:1870741-1870888
  • TA
  • TACTCCCTCTGTCCCATAATATAGCAACCTAGTATCAGATGGGACATTTCATATTACAATGAATCTAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
                 A         C            G            T  CAA          CACCC
TACTCCCTCTGTCCCAT ATATAGCAA CTAGTATCAGAT GGACATTTCATA TA   TGAATCTAGA     
||||||||||||||||| ||||||||| |||||||||||| |||||||||||| ||   ||||||||||      
ATGAGGGAGGCAGGGTA TATATCGTT GATTATGGTCTA CCTGTAAAGTAT AT   GCTTAGATCT     
                 C         A            A            C  ATG          ATCCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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