Plant MITE

SE2610383

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7351
Oryza sativa
SE2610383
Tc1/Mariner
St30
Chr02:32494840-32495067
TA
TACTCCCTCCATCCCAAAATATAACTTCTAGTGTT

Secondary structure and sequence

TSD TIR

5'

3'

      C     CC         ---        T   CAAAATTTTATCCC     GCAAAAACTTCTCCACCTACTTTCTTATCTCAATCAATCACAACCATCTTTCATTTAATTTCTCT
TACTCC TCCAT  CAAAATATA   ACTTCTAG GTT              GAAAT                                                                 
|||||| |||||  |||||||||   |||||||| |||              |||||                                                                 A
ATGAGG AGGTA  GTTTTATAT   TGAAGATC CAA              AAAGT                                                                 
      T     AA         TCG        T   --------------     GCCCTTAATTCTTCTCCACTTTAATTTACTCCCTACCAACAGTAGCTAATTCTACTCTTTTATAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610383

TACTCCCTCCATCCCAAAATATAACTTCTAGTGTTCAAAATTTTATCCCGAAATGCAAAAACTTCTCCACCTACTTTCTTATCTCAATCAATCACAACCATCTTTCATTTAATTTCTCTACATATTTTCTCATCTTAATCGATGACAACCATCCCTCATTTAATTTCACCTCTTCTTAATTCCCGTGAAAAACTCTAGAAGTGCTTATATTTTGAAATGGATGGAGTA

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