SE2610384

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7352
  • Oryza sativa
  • SE2610384
  • Tc1/Mariner
  • St31
  • Chr07:26900508-26900755
  • TA
  • TACTCCCTCCGTCCCAAAATAAGTCCAATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
         C     AA       C  A    CACCGA     CACATACCAATACACAACCAAAAC  CT    -------------  CCCCTACTTTATCAAATACCAATGAAACTATTCTTCACTTTATCTACTCCC
TACTCCCTC GTCCC  AATAAGT CA TTTT      TTCCA                        GA  AGAA             TG                                                   
||||||||| |||||  ||||||| || ||||      |||||                        ||  ||||             ||                                                   A
ATGAGGGAG CAGGG  TTATTCA GT AAAA      AAGGT                        AG  GGTT             TA                                                   
         A     CA       A  A    TCGAGG     --------------------AAAC  --    TTATTTATTCAAG  ATAATCTCATTAGTAACGTAGCCTCAAGCACTTTCATCCCTTATTAACATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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