SE2610385

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7353
  • Oryza sativa
  • SE2610385
  • Tc1/Mariner
  • St32
  • Chr02:3793050-3793295
  • TA
  • TACTACCGTCTCACAATAGGTTCATTTTTCACTAGTCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAC    A  ---      C      TTC      CA  A     ACATATATCAATATAAAACC   -    CTAC      CCCACTTTATCAAATCCCAATACGGTTATTCTTCTTTTTATCTACTCCGAATGA
   TACT CC   GTCTCA AATAGG   ATTTTT  CT GTCCC                    AAA AAGA    AATAGC                                                      
   |||| ||   |||||| ||||||   ||||||  || |||||                    ||| ||||    ||||||                                                      A
   ATGA GG   TAGAGT TTATTC   TAAAAA  GG TAGGG                    AAC GAGT    TTTATT                                                      
       G  AGA      C      TAA      AC  G     ------------------CA   A    ----      CAAGTAAATAAAACTCGTTAGTAACATAACCTCAAACACTTTCATCCTCTATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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