Plant MITE

SE2610386

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7354
Oryza sativa
SE2610386
Tc1/Mariner
St33
Chr08:3033529-3033767
TA
TACTCCTTCCGTCCCAAAATAAGTT

Secondary structure and sequence

TSD TIR

5'

3'

         C      A        CATT   CA   AC  CACACATACCAATACAAAACCAAAAA   C     TACCCTCACTTCATCAAATCCCAATGCAATTATTCCCCATTTTATCTACTCCCAA
TACTCCTTC GTCCCA AATAAGTT    TTT  CTC  CC                          AGA TAGAA                                                       
||||||||| |||||| ||||||||    |||  |||  ||                          ||| |||||                                                        
ATGAGGGAG CAGGGT TTATTCAA    AAA  GAG  GG                          GAG TTTAT                                                       
         A      A        ----   CC   GA  -------------------ACAAACA   C     TCAAGTAAAAACTCATTAGTAACGTAACCTCAAACTCTTTCATTCCTTGTTACAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610386

TACTCCTTCCGTCCCAAAATAAGTTCATTTTTCACTCACCCCACACATACCAATACAAAACCAAAAAAGACTAGAATACCCTCACTTCATCAAATCCCAATGCAATTATTCCCCATTTTATCTACTCCCAATACATTGTTCCTTACTTTCTCAAACTCCAATGCAATGATTACTCAAAAATGAACTTATTTCGAGACAAACAGGAGGAGCCAAAAACTTATTATGGGACAGAGGGAGTA

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