SE2610387

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7355
  • Oryza sativa
  • SE2610387
  • Tc1/Mariner
  • St34
  • Chr01:34903843-34904096
  • TA
  • TACTCCCTCCGTTTCGGGTTATAAGACGTTTTGACTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
                                  C    GTTAA G            T       C   CTC          AA           AC   A    C      TC    AATCTATAAT    TAA
TACTCCCTCCGTTTCGGGTTATAAGACGTTTTGA TTTG     A TCAAACTACTCT AGTTTGA TAA   TGTAGGAAAA  TAGTAATATTT  AAC CCAG ATAGAT  ATTA          TGAA   
|||||||||||||||||||||||||||||||||| ||||     | |||||||||||| ||||||| |||   ||||||||||  |||||||||||  ||| |||| ||||||  ||||          ||||    
ATGAGGGAGGCAAAGTCTAATATTCTGCAAAACT AAAT     T AGTTTGATGAGA TCAAACT ATT   ACATCTTTTT  ATCATTATAAA  TTG GGTT TGTTTA  TAAT          ACTT   
                                  -    ----- G            T       A   AAA          -C           AA   -    C      TA    ----------    TTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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