Plant MITE

SE2610388

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7356
Oryza sativa
SE2610388
Tc1/Mariner
St35
Chr07:15781374-15781632
TA
TACTCCCTCCGTTTCATATTATAAGTCGTTTGACTTTTTTCTTAGTGAACC

Secondary structure and sequence

TSD TIR

5'

3'

                                         -     G  C TTCT    A         -            TATAA     TTT  AACCCAAAACA        ATCAAAATATATTCAATGT
TACTCCCTCCGTTTCATATTATAAGTCGTTTGACTTTTTTC TTAGT AA C    TTAA TTTGATCAA TTTATAGAAAAA     TAGTA   TC           AATATATT                   
||||||||||||||||||||||||||||||||||||||||| ||||| || |    |||| ||||||||| ||||||||||||     |||||   ||           ||||||||                    
ATGAGGGAGGCAAAGTATGATATTCAGCAAACTGAAAAAAG AATCA TT G    AATT AAACTAGTT AAGTATTTTTTT     ATCAT   AG           TTATAGTT                   
                                         G     G  T TAAC    A         C            ---TA     TGT  --------ATT        AAATCAAAGTAATTTAGAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610388

TACTCCCTCCGTTTCATATTATAAGTCGTTTGACTTTTTTCTTAGTGAACCTTCTTTAAATTTGATCAATTTATAGAAAAATATAATAGTATTTTCAACCCAAAACAAATATATTATCAAAATATATTCAATGTTAGATTTAATGAAACTAAATTGATATTTTAGATGTTACTAATTTTTTTTATGAACTTGATCAAAATTAACAATGTTTGACTAAGGAAAAAAGTCAAACGACTTATAGTATGAAACGGAGGGAGTA

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