Plant MITE

SE2610389

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7357
Oryza sativa
SE2610389
Tc1/Mariner
St36
Chr10:13308968-13309116
TA
TCCATCCGTCCCAAAATATAAGAAGCTTAGATAGGATGGGACATTTCCTAGTACTATGAATCTGGATAGGCTGCCTGTTCAGATTCGTAGTAATAGGAAATGTCCCATCCGGTCCTAGGTTCTTATATTTTAGGACGGATGGA

Secondary structure and sequence

TSD TIR

5'

3'

TAC           C            G  TA   A                 G                   C
   TCCATCCGTCC AAAATATAAGAA CT  GAT GGATGGGACATTTCCTA TACTATGAATCTGGATAGG 
   ||||||||||| |||||||||||| ||  ||| ||||||||||||||||| ||||||||||||||||||| T
   AGGTAGGCAGG TTTTATATTCTT GA  CTG CCTACCCTGTAAAGGAT ATGATGCTTAGACTTGTCC 
ATA           A            G  TC   G                 A                   G

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2610389

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2610389