Plant MITE

SE2610390

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7358
Oryza sativa
SE2610390
Tc1/Mariner
St36
Chr02:9856044-9856192
TA
TACTCCCTCTGTCCTACAATATGAGAATCTAAAACTGAATGGGATATTTTATATTACTACGAATCTAGACAAATAGTTTGTCCAGATTCGTAGTACTAGAAAATGTCCTATCCAGTACTAGTTTCTTATATTTTGGGACGGAGGGAGTA

Secondary structure and sequence

TSD TIR

5'

3'

                C          T   AA    A            A  T            A      T
TACTCCCTCTGTCCTA AATATGAGAA CTA  ACTG ATGGGATATTTT TA TACTACGAATCT GACAAA 
|||||||||||||||| |||||||||| |||  |||| |||||||||||| || |||||||||||| |||||| A
ATGAGGGAGGCAGGGT TTATATTCTT GAT  TGAC TATCCTGTAAAA AT ATGATGCTTAGA CTGTTT 
                T          T   CA    C            G  C            C      G

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2610390

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2610390