SE2610394

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7362
  • Oryza sativa
  • SE2610394
  • Tc1/Mariner
  • St36
  • Chr05:19051360-19051508
  • TA
  • TACTCCCTCCGTTCCAAAATATAGCAACTTAGAATCGGATGGGACGTATCCCAGTACTACAAATCTGGACA

Secondary structure and sequence

TSD    TIR
5'



3' 
                A          C    A    GA  G  C     CC       C    C      GGA
TACTCCCTCCGTTCCA AATATAGCAA TTAG ATCG  TG GA GTATC  AGTACTA AAAT TGGACA   
|||||||||||||||| |||||||||| |||| ||||  || || |||||  ||||||| |||| ||||||   G
ATGAGGGAGGCAGGGT TTATATTGTT GATC TAGC  AC CT CATAG  TCATGAT TTTA ACCTGT   
                A          A    C    AT  A  A     TA       A    A      ACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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