Plant MITE

SE2610396

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7364
Oryza sativa
SE2610396
Tc1/Mariner
St37
Chr06:31055887-31056036
TA
TACTCCTTCCGTTC

Secondary structure and sequence

TSD TIR

5'

3'

              CAAAA       G      T                        CA      C      GAG
TACTCCTTCCGTTC     AAAAAAC AATCTA TACTAGATGTGATATATTCTAGTG  ATGAAT TGGATA   
||||||||||||||     ||||||| |||||| ||||||||||||||||||||||||  |||||| ||||||    
ATGAGGGAGGCAGG     TTTTTTG TTGGAT ATGATTTATACTGTGTAGGATTAT  TATTTA ATCTGT   
              --ATA       G      T                        AA      A      ATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610396

TACTCCTTCCGTTCCAAAAAAAAAACGAATCTATTACTAGATGTGATATATTCTAGTGCAATGAATCTGGATAGAGGTATGTCTAAATTTATAATATTAGGATGTGTCATATTTAGTATTAGGTTGGTTTTTTATAGGACGGAGGGAGTA

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