SE2610399

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7367
  • Oryza sativa
  • SE2610399
  • Tc1/Mariner
  • St37
  • Chr02:12385000-12385148
  • TA
  • TACTCCCTCCGTCCCATAATATAAGGGATTTTGGAGGGATATGATATATCCTAGTACTACGAATCTGGACAGGGAGCCTGTTTAGATTCATAGTACTAGAATATGTCACATCCCTCCAAAATTCCTTATATTTTGGGACAGAGGGAGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
         C      T                       A        C         C             G
TACTCCCTC GTCCCA AATATAAGGGATTTTGGAGGGAT TGATATAT CTAGTACTA GAATCTGGACAGG 
||||||||| |||||| ||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||| A
ATGAGGGAG CAGGGT TTATATTCCTTAAAACCTCCCTA ACTGTATA GATCATGAT CTTAGATTTGTCC 
         A      T                       C        A         A             G
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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