Plant MITE

SE2610401

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7369
Oryza sativa
SE2610401
Tc1/Mariner
St37
Chr03:516476-516715
TA
TACTCCCTCCGTCCCACAATATAAGAGATTTTGAGTTTTTGTTTGTAACGTTTGACCACTCGTCTTATTCAATTTTTTTTGCAAAT

Secondary structure and sequence

TSD TIR

5'

3'

                C        A                                              TTT      C    ----------ATAAAA   GAAAAGTTGTACTTAAAGTA
TACTCCCTCCGTCCCA AATATAAG GATTTTGAGTTTTTGTTTGTAACGTTTGACCACTCGTCTTATTCAA   TTTTTG AAAT                AAC                    
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||   |||||| ||||                |||                    C
ATGAGGGAGGCAGGGT TTATATTC CTAAAACTCAAAAACGAACGTTGCAAACTGGTGAGCAGAATAAGTT   AAAAAC TTTA                ACA                    
                A        C                                              TTT      -    ATAATAAATAAAATAA   CTGAATGAAATAATAGATGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610401

TACTCCCTCCGTCCCACAATATAAGAGATTTTGAGTTTTTGTTTGTAACGTTTGACCACTCGTCTTATTCAATTTTTTTTGCAAATATAAAAAACGAAAAGTTGTACTTAAAGTACTGTAGATAATAAAGTAAGTCACAAATAAAATAAATAATAATTTCAAAAATTTTTGAATAAGACGAGTGGTCAAACGTTGCAAGCAAAAACTCAAAATCCCTTATATTATGGGACGGAGGGAGTA

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