SE2610402

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7370
  • Oryza sativa
  • SE2610402
  • Tc1/Mariner
  • St37
  • Chr12:2456718-2456864
  • TA
  • TACTCCCTCCGTCCCTAAAAAACGAATCTAGAACCGAATATGACATATTCTAGTACGATGAATCTAGACAT

Secondary structure and sequence

TSD    TIR
5'



3' 
             - C        G   C   A    A  A                G         G    AT
TACTCCCTCCGTC C TAAAAAAC AAT TAG ACCG AT TGACATATTCTAGTAC ATGAATCTA ACAT  
||||||||||||| | |||||||| ||| ||| |||| || |||||||||||||||| ||||||||| ||||   
ATGAGGGAGGCAG G ATTTTTTG TTA ATC TGGT TA ACTGTGTAGGATCATG TGCTTAGAT TGTA  
             A T        G   T   A    C  C                A         A    TG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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