Plant MITE

SE2610406

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7374
Oryza sativa
SE2610406
Tc1/Mariner
St38
Chr10:788072-788309
TA
TACTCCCTCCGTTTCAAAATGTTTGATACCGTTGACTTTTTAGCACATGTTTCACCGTTCGTCTTATTAAAAAAAATT

Secondary structure and sequence

TSD TIR

5'

3'

                                           C  A     C               AA        -   AA  --     AAACTATATGTGTACATGAAAGTATATTT
TACTCCCTCCGTTTCAAAATGTTTGATACCGTTGACTTTTTAG AC TGTTT ACCGTTCGTCTTATT  AAAAAATT GTG  AT  ATATA                             
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||  |||||||| |||  ||  |||||                              
ATGAGGGAGGCAAAGTTTTACAAACTGTGGCAACTGAAAAATC TG ACAAA TGGTAAGCAGAATAA  TTTTTTAA TTC  AT  ATAAA                             
                                           A  C     C               -G        A   --  TA     TAAGAAAAGTATAGTAAACTAAGTAACAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610406

TACTCCCTCCGTTTCAAAATGTTTGATACCGTTGACTTTTTAGCACATGTTTCACCGTTCGTCTTATTAAAAAAAATTGTGAAATATATAAAACTATATGTGTACATGAAAGTATATTTAACAATGAATCAAATGATATGAAAAGAATAAATAATTACTTAAATTTTTTGAATAAGACGAATGGTCAAACACGTACTAAAAAGTCAACGGTGTCAAACATTTTGAAACGGAGGGAGTA

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