Plant MITE

SE2610407

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7375
Oryza sativa
SE2610407
Tc1/Mariner
St38
Chr06:7604186-7604423
TA
TACTCCCTCCGTTTTTTAATAGATGACGCCGTTGACTTTTTCTCACATGTTTGACCATTCGTCTTATTCAAAAATTTTGTGTAAATGTA

Secondary structure and sequence

TSD TIR

5'

3'

    C                                                                     T         A    --------TAA   ATAAATCACACTTAAAGTAC
TACT CCTCCGTTTTTTAATAGATGACGCCGTTGACTTTTTCTCACATGTTTGACCATTCGTCTTATTCAAAAA TTTGTGTAA TGTA           GAT                    
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||           |||                     
ATGA GGAGGCAAAAAATTATCTACTGCGGCAACTGAAAAAGAGTGTACAAACTGGTAAGCAGAATAAGTTTTT AAATGCATT ATAT           ATA                    
    T                                                                     T         A    TAAATAAAACA   CTCAACAAAATAGTGAGTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610407

TACTCCCTCCGTTTTTTAATAGATGACGCCGTTGACTTTTTCTCACATGTTTGACCATTCGTCTTATTCAAAAATTTTGTGTAAATGTATAAGATATAAATCACACTTAAAGTACTATGAGTGATAAAACAACTCATAACAAAATAAATTATAATTACGTAAATTTTTTGAATAAGACGAATGGTCAAACATGTGAGAAAAAGTCAACGGCGTCATCTATTAAAAAACGGAGGTAGTA

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