Plant MITE

SE2610408

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7376
Oryza sativa
SE2610408
Tc1/Mariner
St38
Chr07:6944507-6944745
TA
TACTACCTCCATATTTTAATGTATGACCCCGTTGACTTTTTATCTAACGTTTGACCATTCGTCTTATTCAAAAATTTTATGTAATTAT

Secondary structure and sequence

TSD TIR

5'

3'

    A     A                C              TC       T          C        AAA    A  T  T   CATTTAT     --T   A     --TT   CAT
TACT CCTCC TATTTTAATGTATGAC CCGTTGACTTTTTA  TAACGTT GACCATTCGT TTATTCAA   TTTT TG AA TAT       TTTAT   GTG CTTGA    CAT   
|||| ||||| |||||||||||||||| ||||||||||||||  ||||||| |||||||||| ||||||||   |||| || || |||       |||||   ||| |||||    |||    
ATGA GGAGG ATAAAATTACATACTG GGCAACTGAAAAAT  ATTGCAA CTGGTAAGCA AATAAGTT   AAAA AC TT ATA       AAATA   TAC GAATT    GTA   
    G     C                C              TC       C          A        AAA    C  T  T   CTTTTAC     CAG   -     TCTT   AAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610408

TACTACCTCCATATTTTAATGTATGACCCCGTTGACTTTTTATCTAACGTTTGACCATTCGTCTTATTCAAAAATTTTATGTAATTATCATTTATTTTATTGTGACTTGATTCATCATCAAATGTTCTTTAAGCATGACATAAACATTTTCATATTTTCACAAAAAAATTGAATAAAACGAATGGTCCAACGTTACTTAAAAAGTCAACGGCGTCATACATTAAAATACGGAGGGAGTA

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